[Fedora-r-devel-list] R2spec kibitzing.
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Sorry, those messages were supposed to have come out periodically over the last week or two. I've got the next version ready, tested as I had alluded to in my previous. http://nersp.osg.ufl.edu/~asr/media/R2spec-2.6.1-asr.src.rpm So, here's what I did to get more or less useful results out of it: After installing, I made a temp directory, /var/tmp/Rstuff. There, I ran (as root): # clear; R2spec -n "Allen S. Rout" -e "asr@xxxxxxx" -c --force --suggests --verbose --package ggplot2 This downloaded the CRAN-like lists of packages, downloaded source tarballs, and built (and copied) the specfiles and source. It also generated a few dot files, including the broad and narrow dependency graphs for the requested package. It also generates a shell file: 'rpmbuild.sh'. This is intended to make all the RPMs you need for the broad graph. I haven't decided what the sane options are in terms of 'pwd' throughout all this process. At the moment, the next step is: # cd /usr/src/redhat/SPECS # sh /var/tmp/Rstuff/rpmbuild.sh This will build and install all of the RPMs in the broad graph. ... If the individual builds work. This script uses a tempdir extensively, again I'm not sure what the Right Way is to do this, I haven't thought about it too much yet. It's statically defined at the beginning of the script to be /var/tmp/Rstuff that's obviously inappropriate for release, but will do for the moment. The script drops a build log and an install log for every package addressed. Right now, for me to get the sysdeps to build and install all (most) of ggplot2's broad depgraph, I must: yum install openmpi openmpi-devel openmpi-libs unixODBC-devel pvm tcl tcl-devel perl-DateManip perl-Date-Calc perl-version and then install from EPEL: environment-modules-3.2.6-4.el5.x86_64.rpm mpich2-1.1.1-1.el5.x86_64.rpm perl-IO-stringy-2.110-5.el5.noarch.rpm perl-Jcode-2.06-6.el5.noarch.rpm perl-OLE-Storage_Lite-0.14-9.el5.noarch.rpm perl-Parse-RecDescent-1.96-1.el5.noarch.rpm perl-Spreadsheet-WriteExcel-2.18-1.el5.noarch.rpm perl-Unicode-Map-0.112-12.el5.x86_64.rpm and then install from the graphviz people: graphviz-2.24.0-1.el5.x86_64.rpm graphviz-devel-2.24.0-1.el5.x86_64.rpm With these things done, I still fail to build (and haven't investigated much yet): tcltk2: Fails to install: need tclsh8.3, not 8.4 ? multcomp: requires Survival >= 2.35.7 ? ... flexmix: dep on multcomp R-RandomFields, R-MCMCpack: uncaught debug files in the build tree. MPI, sprng As threatened, my next step will be a similar shell script to R CMD CHECK all the packages, and populate yet another family of logfiles. Once that is complete, I will re-announce and go back to try to figure out why individual packages fail. - Allen S. Rout _______________________________________________ Fedora-r-devel-list mailing list Fedora-r-devel-list@xxxxxxxxxx http://www.redhat.com/mailman/listinfo/fedora-r-devel-list
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